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Table 1 Single Nucleotide Polymorphisms (SNPs) genotyped in asthma patients

From: Single nucleotide polymorphisms in asthma candidate genes TBXA2R, ADAM33 FCER1B and ORMDL3 in Pakistani asthmatics a case control study

GENE

Chr location

rs #

Literature cited

Genotyping technique

Call Rate

Allele (minor/major)

MAF

HWE

p-value

ADRB2

5

rs1042713

[19]

iPLEX

0.962

A/G

0.432

0.566

HLA-G

6

rs1063320

[20]

Taqman

0.993

C/G

0.257

0.090

NOS3

7

rs1799983

[21]

iPLEX

0.969

T/G

0.185

0.655

NOS3

7

rs1800779

[22]

iPLEX

0.964

G/A

0.197

0.233

FCER1B

11

rs2583476

[23]

iPLEX

0.966

C/T

0.480

0.191

NOS1

12

rs2682826

[24]

iPLEX

0.968

T/C

0.292

0.327

ORMDL3

17

rs11650680

[25, 26]

iPLEX

0.969

T/C

0.220

0.602

GSDMA

17

rs3894194

[27]

iPLEX

0.955

T/C

0.491

0.767

ORMDL3

17

rs7216389

[26]

Taqman

0.901

C/T

0.413

0.199

ORMDL3

17

rs8079416

[27]

iPLEX

0.958

T/C

0.486

0.775

TBXA2R

19

rs1131882

[28]

iPLEX

0.964

A/G

0.188

0.247

TFGB1 a

19

rs1800469

[29]

iPLEX

0.957

T/C

0.353

0.022

TBXA2R

19

rs4523

[30, 31]

iPLEX

0.955

C/T

0.480

0.380

ADAM33

20

rs2280091

[32]

iPLEX

0.944

G/A

0.192

0.060

ADAM33

20

rs528557

[11, 33]

iPLEX

0.908

G/C

0.393

0.163

ADAM33

20

rs543749

[11]

iPLEX

0.940

T/G

0.189

0.334

  1. MAF minor allele frequency, HWE Hardy-Weinberg equilibrium
  2. aSNP not in HWE so excluded from further analysis